Picture of Gerhard Wagner

Gerhard Wagner, Ph.D.

Elkan Blout Professor of Biological Chemistry and Molecular Pharmacology

Our research is concerned with structures of proteins and protein complexes and their functional roles. We use NMR spectroscopy, other biophysical techniques, computational tools and small molecule inhibitors to reveal mechanisms and cellular significance of protein interactions.

The primary structural focus is on how eukaryotic translation initiation regulates the fate of cells. In particular, we are interested in the interaction of the cap-binding proteins eIF4E with the mRNA cap, the scaffold protein eIF4G, and the regulatory 4E-BPs, and how these interactions are related to cell transformation and apoptosis. To address this, we have identified small-molecule inhibitors of the eIF4E/eIF4G interaction and found that these may have anti-tumor activity. We are also interested in interactions of other eukaryotic initiation factors including eIF4G, eIF4A, eIF4B, eIF3, and in identifying  small-molecule inhibitors as potential therapeutic agents.

We also seek to understand mechanisms of T-cell function from structural studies. This includes the abTCR and the associated CD3 complexes. In addition, we try to understand mechanisms of downstream signaling at the level of nuclear translocation of nuclear factor of activated T cells (NFAT) through de-phosphorylation by calcineurin.

We are interested in protein-protein interactions in apoptosis. These include molecules from the Bcl-2 family and the mitochondrial membrane protein VDAC, and proteins that interact with VDAC. Recently we have developed procedures for incorporating membrane proteins in covalently circularized phospholipid nanodiscs creating stable membrane protein preparations usable for numerous membrane protein studies and membrane protein complexes.

Address: 

Room C1-112

240 Longwood Avenue

Boston, MA 02115

Publications View
Protocol to analyze dysregulation of the eIF4F complex in human cancers using R software and large public datasets.
Authors: Authors: Wu S, Wagner G.
STAR Protoc
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Challenges for chemistry in Ukraine after the war: Ukrainian science requires rebuilding and support.
Authors: Authors: Kondratov IS, Moroz YS, Gorgulla C, Grygorenko OO, Komarov IV, Wagner G, Tolmachev AA.
Proc Natl Acad Sci U S A
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NIN-like protein 7 transcription factor is a plant nitrate sensor.
Authors: Authors: Liu KH, Liu M, Lin Z, Wang ZF, Chen B, Liu C, Guo A, Konishi M, Yanagisawa S, Wagner G, Sheen J.
Science
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High fidelity sampling schedules for NMR spectra of high dynamic range.
Authors: Authors: Hyberts SG, Wagner G.
J Magn Reson
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Deep computational analysis details dysregulation of eukaryotic translation initiation complex eIF4F in human cancers.
Authors: Authors: Wu S, Wagner G.
Cell Syst
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VirtualFlow Ants-Ultra-Large Virtual Screenings with Artificial Intelligence Driven Docking Algorithm Based on Ant Colony Optimization.
Authors: Authors: Gorgulla C, Çinaroglu SS, Fischer PD, Fackeldey K, Wagner G, Arthanari H.
Int J Mol Sci
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NUScon: a community-driven platform for quantitative evaluation of nonuniform sampling in NMR.
Authors: Authors: Pustovalova Y, Delaglio F, Craft DL, Arthanari H, Bax A, Billeter M, Bostock MJ, Dashti H, Hansen DF, Hyberts SG, Johnson BA, Kazimierczuk K, Lu H, Maciejewski M, Miljenovic TM, Mobli M, Nietlispach D, Orekhov V, Powers R, Qu X, Robson SA, Rovnyak D, Wagner G, Ying J, Zambrello M, Hoch JC, Donoho DL, Schuyler AD.
Magn Reson (Gott)
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Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state.
Authors: Authors: Wang Y, Kaur P, Sun ZJ, Elbahnasawy MA, Hayati Z, Qiao ZS, Bui NN, Chile C, Nasr ML, Wagner G, Wang JH, Song L, Reinherz EL, Kim M.
Proc Natl Acad Sci U S A
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A nanobody that recognizes a 14-residue peptide epitope in the E2 ubiquitin-conjugating enzyme UBC6e modulates its activity.
Authors: Authors: Ling J, Cheloha RW, McCaul N, Sun ZJ, Wagner G, Ploegh HL.
Mol Immunol
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Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.
Authors: Authors: Arthanari H, Takeuchi K, Dubey A, Wagner G.
Curr Opin Struct Biol
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