Picture of Donald Coen

Donald Mark Coen, Ph.D.

Professor of Biological Chemistry and Molecular Pharmacology

Our laboratory takes molecular approaches to herpesvirus replication and latency. Current projects focus on the biogenesis, mechanisms of repression, and biological roles of viral microRNAs during HSV infection.

Research:

Our laboratory takes molecular approaches to herpesvirus replication and latency.  These studies provide excellent models for biological processes in eukaryotic cells and, because herpesviruses such as herpes simplex virus (HSV) and human cytomegalovirus (HCMV) are important pathogens, to exploit differences between herpesvirus and cellular processes for safe and effective antiviral therapy.   Areas of research include:

Novel post-transcriptional regulatory mechanisms.  Current projects focus on the biogenesis, mechanisms of repression, and biological roles of viral microRNAs during HSV infection.

Herpesvirus DNA replication proteins:  Projects include determining the 3-D structures of these proteins (with the Hogle lab), and the roles of poorly understood structural domains, and exploring their interactions with each other, cellular proteins, and nucleic acids via biochemical, mutational, and biophysical approaches, including (with the Loparo and Golan labs) single molecule methods.   These studies should permit detailed understanding of these complicated proteins and rational drug design.

Nuclear egress:  How do HCMV nucleocapsids move towards and gain access to the inner nuclear membrane, and bud through it?  Projects include biochemical and biophysical studies of a viral enzyme that mimics cyclin-dependent kinase and of a nuclear egress complex (in collaboration with the Hogle lab), and molecular genetic and cell biological studies of these proteins' functions in infected cells.

Drug targets and development of new therapies.   Aside from studies of established drug targets (herpesvirus DNA polymerases and the HCMV protein kinase), projects include discovering new antiviral drugs that inhibit protein-protein interactions, and finding new drug targets by a combination of "chemical genetic" and molecular genetic approaches.

HSV latency/pathogenesis.  HSV forms latent infections that persist for the life of the host.  How this occurs is biologically fascinating and clinically important.  Projects entail molecular genetic, and PCR-basedmethods to explore viral gene regulation especially how viral and host microRNAs repress viral gene expression, thereby maintaining latency.

Address: 

Room SGM - 304

250 Longwood Avenue

Boston, MA 02115

Publications View
Host DNA repair factors empower a mechanism of antiviral nucleoside analog resistance.
Authors: Authors: Longmire P, Chen H, McKinzey DR, Savanagouder M, Kosarek NN, Pesola JM, Bobak CA, Bosco G, Goodrum F, Coen DM.
bioRxiv
View full abstract on Pubmed
Counteracting FOX proteins epigenetically control the herpesvirus lytic-latent balance.
Authors: Authors: Xiang Y, Yang X, Zhang J, Hou F, Deng Y, Fu H, Oh HS, Wang Q, Chen S, Sun Z, Das B, Yeo YY, Pesola JM, Sen P, Jiang S, Knipe DM, Coen DM, Pan D.
Nat Commun
View full abstract on Pubmed
Mechanisms of HSV-1 helicase-primase inhibition and replication fork complex assembly.
Authors: Authors: Yu Z, Sathyanarayana P, Liu C, Tan JMJ, Yang P, Das B, Hu S, Fan X, Ji C, Weller SK, Shekhar M, Coen DM, Kranzusch PJ, Loparo JJ, Abraham J.
Cell
View full abstract on Pubmed
Mechanisms of HSV-1 helicase-primase inhibition and replication fork complex assembly.
Authors: Authors: Yu Z, Sathyanarayana P, Liu C, Yang P, Weller SK, Shekhar M, Coen DM, Loparo JJ, Abraham J.
bioRxiv
View full abstract on Pubmed
Herpes simplex virus 1 ICP34.5 acts to maintain latency in human and mouse neurons.
Authors: Authors: Canova PN, Katzenell S, Cerón S, Charron AJ, Pesola JM, Oh HS, Coen DM, Knipe DM, Leib DA.
Virology
View full abstract on Pubmed
Corrigendum to "Herpes simplex virus 1 ICP34.5 acts to maintain latency in human and mouse neurons" [Virology 611 (2025) 110652].
Authors: Authors: Canova PN, Katzenell S, Ceron S, Charron AJ, Pesola JM, Oh HS, Coen DM, Knipe DM, Leib DA.
Virology
View full abstract on Pubmed
Validation of human sensory neurons derived from inducible pluripotent stem cells as a model for latent infection and reactivation by herpes simplex virus 1.
Authors: Authors: Oh HS, Chou S-F, Raja P, Shim J, Das B, Pesola JM, Romero N, Lee JS, Ng A, Buttermore ED, Church G, Woolf CJ, Coen DM, Knipe DM.
mBio
View full abstract on Pubmed
Regulation of the innate immune response in human neurons by ICP34.5 maintains herpes simplex virus 1 latency.
Authors: Authors: Canova PN, Katzenell S, Cerón S, Charron AJ, Pesola JM, Oh HS, Coen DM, Knipe DM, Leib DA.
bioRxiv
View full abstract on Pubmed
Viral DNA polymerase structures reveal mechanisms of antiviral drug resistance.
Authors: Authors: Shankar S, Pan J, Yang P, Bian Y, Oroszlán G, Yu Z, Mukherjee P, Filman DJ, Hogle JM, Shekhar M, Coen DM, Abraham J.
Cell
View full abstract on Pubmed
The conserved RNP motif of the herpes simplex virus 1 family B DNA polymerase is crucial for viral DNA synthesis but not polymerase activity.
Authors: Authors: Lawler JL, Terrell S, Coen DM.
Virology
View full abstract on Pubmed