Picture of Gerhard Wagner

Gerhard Wagner, Ph.D.

Elkan Blout Professor of Biological Chemistry and Molecular Pharmacology

Our research is concerned with structures of proteins and protein complexes and their functional roles. We use NMR spectroscopy, other biophysical techniques, computational tools and small molecule inhibitors to reveal mechanisms and cellular significance of protein interactions.

The primary structural focus is on how eukaryotic translation initiation regulates the fate of cells. In particular, we are interested in the interaction of the cap-binding proteins eIF4E with the mRNA cap, the scaffold protein eIF4G, and the regulatory 4E-BPs, and how these interactions are related to cell transformation and apoptosis. To address this, we have identified small-molecule inhibitors of the eIF4E/eIF4G interaction and found that these may have anti-tumor activity. We are also interested in interactions of other eukaryotic initiation factors including eIF4G, eIF4A, eIF4B, eIF3, and in identifying  small-molecule inhibitors as potential therapeutic agents.

We also seek to understand mechanisms of T-cell function from structural studies. This includes the abTCR and the associated CD3 complexes. In addition, we try to understand mechanisms of downstream signaling at the level of nuclear translocation of nuclear factor of activated T cells (NFAT) through de-phosphorylation by calcineurin.

We are interested in protein-protein interactions in apoptosis. These include molecules from the Bcl-2 family and the mitochondrial membrane protein VDAC, and proteins that interact with VDAC. Recently we have developed procedures for incorporating membrane proteins in covalently circularized phospholipid nanodiscs creating stable membrane protein preparations usable for numerous membrane protein studies and membrane protein complexes.

Address: 

Room C1-112

240 Longwood Avenue

Boston, MA 02115

Publications View
Molecular framework for the activation of RNA-dependent protein kinase.
Authors: Authors: McKenna SA, Lindhout DA, Kim I, Liu CW, Gelev VM, Wagner G, Puglisi JD.
J Biol Chem
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Importance of the CD3gamma ectodomain terminal beta-strand and membrane proximal stalk in thymic development and receptor assembly.
Authors: Authors: Touma M, Sun ZY, Clayton LK, Marissen WE, Kruisbeek AM, Wagner G, Reinherz EL.
J Immunol
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Domain-swapped dimerization of the HIV-1 capsid C-terminal domain.
Authors: Authors: Ivanov D, Tsodikov OV, Kasanov J, Ellenberger T, Wagner G, Collins T.
Proc Natl Acad Sci U S A
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Small-molecule inhibition of the interaction between the translation initiation factors eIF4E and eIF4G.
Authors: Authors: Moerke NJ, Aktas H, Chen H, Cantel S, Reibarkh MY, Fahmy A, Gross JD, Degterev A, Yuan J, Chorev M, Halperin JA, Wagner G.
Cell
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NMR structural investigation of the mitochondrial outer membrane protein VDAC and its interaction with antiapoptotic Bcl-xL.
Authors: Authors: Malia TJ, Wagner G.
Biochemistry
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NMR methods for studying protein-protein interactions involved in translation initiation.
Authors: Authors: Marintchev A, Frueh D, Wagner G.
Methods Enzymol
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Mapping of the auto-inhibitory interactions of protein kinase R by nuclear magnetic resonance.
Authors: Authors: Gelev V, Aktas H, Marintchev A, Ito T, Frueh D, Hemond M, Rovnyak D, Debus M, Hyberts S, Usheva A, Halperin J, Wagner G.
J Mol Biol
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RNA-mediated sequestration of the RNA helicase eIF4A by Pateamine A inhibits translation initiation.
Authors: Authors: Bordeleau ME, Cencic R, Lindqvist L, Oberer M, Northcote P, Wagner G, Pelletier J.
Chem Biol
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Identification of individual protein-ligand NOEs in the limit of intermediate exchange.
Authors: Authors: Reibarkh M, Malia TJ, Hopkins BT, Wagner G.
J Biomol NMR
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Cyclic peptide helices: a hybrid beta-hairpin/beta-helical supersecondary structure.
Authors: Authors: Sastry M, Brown C, Wagner G, Clark TD.
J Am Chem Soc
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